Missing G2 phase in LengESCData

[bug1303]

Column metadata for this dataset supposedly contains experimentally determined cell cycle phase for each cell, however:

sce.ref <- scRNAseq::LengESCData()

table(sce.ref$Phase, useNA="ifany")
 
   G1    S <NA> 
   91   80  289 

So, I looked back at the data and the code used to create this dataset, and found that G2 in fact is present:

phase <- sub("_Exp.*", "", colnames(sce.ref)) 
table(phase)
phase
 G1  G2  H1   S 
 91  76 213  80 

So, this line of code: phase[!phase %in% c("G1", "S", "G2M")] <- NA should be changed into phase[!phase %in% c("G1", "S", "G2")] <- NA

[LTLA]

Oops. How embarrassing; fixed in 2.17.10. (This will release as 2.18.0 next week with the new BioC release.)