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batche effects?

Open Han-zh210 opened this issue 1 year ago • 0 comments

Hi!I'm always frustrated whether scprep.utils.combine_batches could remove batch effects? EBT_counts, sample_labels = scprep.utils.combine_batches( filtered_batches, ["Day 00-03", "Day 06-09", "Day 12-15", "Day 18-21", "Day 24-27"], append_to_cell_names=True ) del filtered_batches # removes objects from memory EBT_counts.head() does it mean combine_batches could remove batch effects in EBT data?Thanks!!did you write a whole post about how to correct them?Thanks again!

Han-zh210 avatar Jan 06 '25 02:01 Han-zh210