A Vignette is Needed

[mdmanurung]

First of all, thank you for making all of these cutting edge tools for single-cell data analysis. I am analysing various CyTOF data sets where I have PBMCs from four groups of volunteers that were stimulated under three different conditions. Due to the complex design, I think SAUCIE would be a good option to try.

Unfortunately, the lack of documentation really impedes my attempt to use this tool. For example, I would like to know how you actually made the plots where you compared the cellular manifolds of acute/convalescent dengue patients etc.

In addition to how to use this tool, knowing what to do afterwards would be really helpful.

Thank you for your assistance!

Best regards, Mikhael