DAseq
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KlugerLab
Hi, Thanks a lot for the tool! However, I found that the following fails ``` library(DAseq) labels_res
Hey there, Great job building this package and looking forward to integrating it into my future data. I was wondering if there is a possibility of adding a precomputed knn...
Hello, I am excited to use this wonderful tool. I was wondering how the updated `pred.thresh` is determined in the updateDAcells function? The tutorial uses -0.8 and 0.8, but I...
Hi DAseq team, Thank you for providing a nice tool. I am having an error message and several warnings when running `getDAregion`. The error is probably related to the statistical...
Hello, I was wondering whether cell numbers in the dataset influence the k.vector() values in the getDAcells() function? If yes, how should one go about trying to find the optimal...
Hi, We have snRNA-seq data collected from four different conditions, and we are excited about using DAseq to analyze it. Is there a way to compare all four conditions at...
Dear author, thanks for your development of such great methods to do differential abundance analysis. I try to use this method for my data, but I couldn't run STGmarkerFinder() function...
Hi, I'm really interested in using this tool! I am however new to this sort of analysis and so was hoping you could help with the basics. I have integrated...
Hello, I try to run DAseq with DAseq Tutorial and my R just breaks down when I run with getDAcells prompt. I use R with version4.0.0. What more details should...
I just stumbled onto your DAseq package and I am eager to give it a try. I am integrating multiple datasets across runs and I am wondering how I can...
