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Failed to build

Open Wang-Yu-Qing opened this issue 4 years ago • 11 comments

Version:

  • CentOS Linux release 7.4.1708 (Core)
  • gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
$ git clone --branch dgl https://github.com/KarypisLab/ParMETIS.git
$ cd ParMETIS
$ make config cc=mpicc prefix=~/local
rm -rf build/Linux-x86_64
mkdir -p build/Linux-x86_64
cd build/Linux-x86_64 && cmake /home/xxx/ParMETIS -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH=/home/xxx/ParMETIS/~/local  -DMETIS_PATH=/home/xxx/ParMETIS/~/local -DCMAKE_INSTALL_PREFIX=/root/local -DCMAKE_C_COMPILER=mpicc
-- The C compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/lib64/mpich-3.2/bin/mpicc
-- Check for working C compiler: /usr/lib64/mpich-3.2/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Looking for execinfo.h
-- Looking for execinfo.h - found
-- Looking for getline
-- Looking for getline - found
-- Configuring done
-- Generating done
-- Build files have been written to: /home/xxx/ParMETIS/build/Linux-x86_64

$ make install

And I get:

make[1]: Entering directory `/home/xxx/ParMETIS/build/Linux-x86_64'
/usr/bin/cmake -H/home/xxx/ParMETIS -B/home/xxx/ParMETIS/build/Linux-x86_64 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /home/xxx/ParMETIS/build/Linux-x86_64/CMakeFiles /home/xxx/ParMETIS/build/Linux-x86_64/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory `/home/xxx/ParMETIS/build/Linux-x86_64'
make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend
make[3]: Entering directory `/home/xxx/ParMETIS/build/Linux-x86_64'
cd /home/xxx/ParMETIS/build/Linux-x86_64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/xxx/ParMETIS /home/xxx/ParMETIS/libparmetis /home/xxx/ParMETIS/build/Linux-x86_64 /home/xxx/ParMETIS/build/Linux-x86_64/libparmetis /home/xxx/ParMETIS/build/Linux-x86_64/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color=
Scanning dependencies of target parmetis
make[3]: Leaving directory `/home/xxx/ParMETIS/build/Linux-x86_64'
make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build
make[3]: Entering directory `/home/xxx/ParMETIS/build/Linux-x86_64'
/usr/bin/cmake -E cmake_progress_report /home/xxx/ParMETIS/build/Linux-x86_64/CMakeFiles 1
[  1%] Building C object libparmetis/CMakeFiles/parmetis.dir/akwayfm.c.o
cd /home/xxx/ParMETIS/build/Linux-x86_64/libparmetis && /usr/lib64/mpich-3.2/bin/mpicc   -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -march=native -fPIC -Werror -Wall -pedantic -Wno-unused-function -Wno-unused-but-set-variable -Wno-unused-variable -Wno-unknown-pragmas -Wno-unused-label -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/home/xxx/ParMETIS/include -I"/home/xxx/ParMETIS/~/local/include" -I/root/local/include -I/home/xxx/ParMETIS/libparmetis/.    -o CMakeFiles/parmetis.dir/akwayfm.c.o   -c /home/xxx/ParMETIS/libparmetis/akwayfm.c
In file included from /root/local/include/GKlib.h:41:0,
                 from /home/xxx/ParMETIS/libparmetis/./parmetislib.h:20,
                 from /home/xxx/ParMETIS/libparmetis/akwayfm.c:14:
/usr/include/signal.h:156:1: error: unknown type name ‘siginfo_t’
 extern void psiginfo (const siginfo_t *__pinfo, const char *__s);
 ^
make[3]: *** [libparmetis/CMakeFiles/parmetis.dir/akwayfm.c.o] Error 1
make[3]: Leaving directory `/home/xxx/ParMETIS/build/Linux-x86_64'
make[2]: *** [libparmetis/CMakeFiles/parmetis.dir/all] Error 2
make[2]: Leaving directory `/home/xxx/ParMETIS/build/Linux-x86_64'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/xxx/ParMETIS/build/Linux-x86_64'
make: *** [install] Error 2

Any ideas how to fix this?

Wang-Yu-Qing avatar Jul 08 '21 09:07 Wang-Yu-Qing

This error comes from your system's include files. Did you figure it out?

karypis avatar Jan 03 '22 03:01 karypis

I want to build ParMetis but I got this error: . . . . ========================ERROR===================== /home/user1/ParMETIS/libparmetis/gkmpi.c: In function ‘libparmetis__gkMPI_Alltoallv’: /home/user1/ParMETIS/libparmetis/gkmpi.c:194:5: error: this ‘if’ clause does not guard... [-Werror=misleading-indentation] 194 | if (sendcounts[i] >= INT_MAX || sdispls[i] >= INT_MAX || | ^~ /home/user1/ParMETIS/libparmetis/gkmpi.c:197:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 197 | break; | ^~~~~ /home/user1/ParMETIS/libparmetis/gkmpi.c: In function ‘libparmetis__gkMPI_Allgatherv’: /home/user1/ParMETIS/libparmetis/gkmpi.c:253:5: error: this ‘if’ clause does not guard... [-Werror=misleading-indentation] 253 | if (sendcount >= INT_MAX || recvcounts[i] >= INT_MAX || rdispls[i] >= INT_MAX) | ^~ /home/user1/ParMETIS/libparmetis/gkmpi.c:255:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 255 | break; | ^~~~~ /home/user1/ParMETIS/libparmetis/gkmpi.c: In function ‘libparmetis__gkMPI_Scatterv’: /home/user1/ParMETIS/libparmetis/gkmpi.c:305:20: error: comparison between pointer and integer [-Werror] 305 | if (sendcounts >= INT_MAX || recvcount >= INT_MAX || sdispls[i] >= INT_MAX) | ^~ /home/user1/ParMETIS/libparmetis/gkmpi.c:305:5: error: this ‘if’ clause does not guard... [-Werror=misleading-indentation] 305 | if (sendcounts >= INT_MAX || recvcount >= INT_MAX || sdispls[i] >= INT_MAX) | ^~ /home/user1/ParMETIS/libparmetis/gkmpi.c:307:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 307 | break; | ^~~~~ /home/user1/ParMETIS/libparmetis/gkmpi.c: In function ‘libparmetis__gkMPI_Gatherv’: /home/user1/ParMETIS/libparmetis/gkmpi.c:357:5: error: this ‘if’ clause does not guard... [-Werror=misleading-indentation] 357 | if (sendcount >= INT_MAX || recvcounts[i] >= INT_MAX || rdispls[i] >= INT_MAX) | ^~ /home/user1/ParMETIS/libparmetis/gkmpi.c:359:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 359 | break; | ^~~~~ cc1: all warnings being treated as errors make[3]: *** [libparmetis/CMakeFiles/parmetis.dir/build.make:209: libparmetis/CMakeFiles/parmetis.dir/gkmpi.c.o] Error 1 make[3]: Leaving directory '/home/user1/ParMETIS/build/Linux-x86_64' make[2]: *** [CMakeFiles/Makefile2:147: libparmetis/CMakeFiles/parmetis.dir/all] Error 2 make[2]: Leaving directory '/home/user1/ParMETIS/build/Linux-x86_64' make[1]: *** [Makefile:133: all] Error 2 make[1]: Leaving directory '/home/user1/ParMETIS/build/Linux-x86_64' make: *** [Makefile:62: install] Error 2

ArashRezaei avatar Mar 01 '22 19:03 ArashRezaei

It should be fixed if you open the gkmpi.c file with vim and type gg=G in the normal mode. Also, you can use any IDE that automatically reformats the code on save.

hadisinaee avatar Aug 08 '22 22:08 hadisinaee

Version:

  • CentOS Linux release 7.4.1708 (Core)
  • gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
$ git clone --branch dgl https://github.com/KarypisLab/ParMETIS.git
$ cd ParMETIS
$ make config cc=mpicc prefix=~/local
rm -rf build/Linux-x86_64
mkdir -p build/Linux-x86_64
cd build/Linux-x86_64 && cmake /home/xxx/ParMETIS -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH=/home/xxx/ParMETIS/~/local  -DMETIS_PATH=/home/xxx/ParMETIS/~/local -DCMAKE_INSTALL_PREFIX=/root/local -DCMAKE_C_COMPILER=mpicc
-- The C compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/lib64/mpich-3.2/bin/mpicc
-- Check for working C compiler: /usr/lib64/mpich-3.2/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Looking for execinfo.h
-- Looking for execinfo.h - found
-- Looking for getline
-- Looking for getline - found
-- Configuring done
-- Generating done
-- Build files have been written to: /home/xxx/ParMETIS/build/Linux-x86_64

$ make install

And I get:

make[1]: Entering directory `/home/xxx/ParMETIS/build/Linux-x86_64'
/usr/bin/cmake -H/home/xxx/ParMETIS -B/home/xxx/ParMETIS/build/Linux-x86_64 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /home/xxx/ParMETIS/build/Linux-x86_64/CMakeFiles /home/xxx/ParMETIS/build/Linux-x86_64/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory `/home/xxx/ParMETIS/build/Linux-x86_64'
make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend
make[3]: Entering directory `/home/xxx/ParMETIS/build/Linux-x86_64'
cd /home/xxx/ParMETIS/build/Linux-x86_64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/xxx/ParMETIS /home/xxx/ParMETIS/libparmetis /home/xxx/ParMETIS/build/Linux-x86_64 /home/xxx/ParMETIS/build/Linux-x86_64/libparmetis /home/xxx/ParMETIS/build/Linux-x86_64/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color=
Scanning dependencies of target parmetis
make[3]: Leaving directory `/home/xxx/ParMETIS/build/Linux-x86_64'
make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build
make[3]: Entering directory `/home/xxx/ParMETIS/build/Linux-x86_64'
/usr/bin/cmake -E cmake_progress_report /home/xxx/ParMETIS/build/Linux-x86_64/CMakeFiles 1
[  1%] Building C object libparmetis/CMakeFiles/parmetis.dir/akwayfm.c.o
cd /home/xxx/ParMETIS/build/Linux-x86_64/libparmetis && /usr/lib64/mpich-3.2/bin/mpicc   -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -march=native -fPIC -Werror -Wall -pedantic -Wno-unused-function -Wno-unused-but-set-variable -Wno-unused-variable -Wno-unknown-pragmas -Wno-unused-label -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/home/xxx/ParMETIS/include -I"/home/xxx/ParMETIS/~/local/include" -I/root/local/include -I/home/xxx/ParMETIS/libparmetis/.    -o CMakeFiles/parmetis.dir/akwayfm.c.o   -c /home/xxx/ParMETIS/libparmetis/akwayfm.c
In file included from /root/local/include/GKlib.h:41:0,
                 from /home/xxx/ParMETIS/libparmetis/./parmetislib.h:20,
                 from /home/xxx/ParMETIS/libparmetis/akwayfm.c:14:
/usr/include/signal.h:156:1: error: unknown type name ‘siginfo_t’
 extern void psiginfo (const siginfo_t *__pinfo, const char *__s);
 ^
make[3]: *** [libparmetis/CMakeFiles/parmetis.dir/akwayfm.c.o] Error 1
make[3]: Leaving directory `/home/xxx/ParMETIS/build/Linux-x86_64'
make[2]: *** [libparmetis/CMakeFiles/parmetis.dir/all] Error 2
make[2]: Leaving directory `/home/xxx/ParMETIS/build/Linux-x86_64'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/xxx/ParMETIS/build/Linux-x86_64'
make: *** [install] Error 2

Any ideas how to fix this?

Did you get the solution for this? I am also getting the same error

rushikesh-7 avatar Aug 22 '22 10:08 rushikesh-7

if you build with cmake [...] -D CMAKE_C_FLAGS="-D_POSIX_C_SOURCE=199309L" [...] or make config [...] CONFIG_FLAGS="-D CMAKE_C_FLAGS=-D_POSIX_C_SOURCE=199309L"

you should be able to build without problem,

Its a POSIX version problem at least on centos7

olerichter avatar Oct 16 '22 13:10 olerichter

Hi, I am trying to build ParMETIS on Ubuntu 22.04.2 LTS but get compilation errors: three METIS options are found undeclared in initpart.c: METIS_OPTION_NIPARTS METIS_OPTION_DROPEDGES METIS_OPTION_ONDISK See listing below. I have installed GKlib and metis-5.1.0. I am wondering why mpicc is flagged as "skipped" during config.

$ mpicc -showme gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi

I am still much of a beginner and would be very grateful if you could help me fix this.

$ make config cc=mpicc prefix=~/local rm -rf build/Linux-x86_64 mkdir -p build/Linux-x86_64 cd build/Linux-x86_64 && cmake /home/XXX/ParMETIS -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH=/home/XXX/ParMETIS/~/local -DMETIS_PATH=/home/XXX/ParMETIS/~/local -DCMAKE_INSTALL_PREFIX=/home/XXX/local -DCMAKE_C_COMPILER=mpicc CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake.

Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions.

-- The C compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for getline -- Looking for getline - found -- Configuring done -- Generating done -- Build files have been written to: /home/XXX/ParMETIS/build/Linux-x86_64

XXX@XXX:~/ParMETIS$ make install make[1]: Entering directory '/home/XXX/ParMETIS/build/Linux-x86_64' /usr/bin/cmake -S/home/XXX/ParMETIS -B/home/XXX/ParMETIS/build/Linux-x86_64 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/XXX/ParMETIS/build/Linux-x86_64/CMakeFiles /home/XXX/ParMETIS/build/Linux-x86_64//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/home/XXX/ParMETIS/build/Linux-x86_64' make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend make[3]: Entering directory '/home/XXX/ParMETIS/build/Linux-x86_64' cd /home/XXX/ParMETIS/build/Linux-x86_64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/XXX/ParMETIS /home/XXX/ParMETIS/libparmetis /home/XXX/ParMETIS/build/Linux-x86_64 /home/XXX/ParMETIS/build/Linux-x86_64/libparmetis /home/XXX/ParMETIS/build/Linux-x86_64/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= make[3]: Leaving directory '/home/XXX/ParMETIS/build/Linux-x86_64' make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build make[3]: Entering directory '/home/XXX/ParMETIS/build/Linux-x86_64'

[... Skipping several successful steps ...]

[ 28%] Building C object libparmetis/CMakeFiles/parmetis.dir/initpart.c.o cd /home/XXX/ParMETIS/build/Linux-x86_64/libparmetis && /usr/bin/mpicc -I/home/XXX/ParMETIS/include -I"/home/XXX/ParMETIS/~/local/include" -I/home/XXX/local/include -I/home/XXX/ParMETIS/libparmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -march=native -fPIC -Werror -Wall -pedantic -Wno-unused-function -Wno-unused-but-set-variable -Wno-unused-variable -Wno-unknown-pragmas -Wno-unused-label -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -MD -MT libparmetis/CMakeFiles/parmetis.dir/initpart.c.o -MF CMakeFiles/parmetis.dir/initpart.c.o.d -o CMakeFiles/parmetis.dir/initpart.c.o -c /home/XXX/ParMETIS/libparmetis/initpart.c /home/XXX/ParMETIS/libparmetis/initpart.c: In function ‘libparmetis__InitPartition’: /home/XXX/ParMETIS/libparmetis/initpart.c:77:14: error: ‘METIS_OPTION_NIPARTS’ undeclared (first use in this function); did you mean ‘METIS_OPTION_TPWGTS’? 77 | moptions[METIS_OPTION_NIPARTS] = 1; | ^~~~~~~~~~~~~~~~~~~~ | METIS_OPTION_TPWGTS /home/XXX/ParMETIS/libparmetis/initpart.c:77:14: note: each undeclared identifier is reported only once for each function it appears in /home/XXX/ParMETIS/libparmetis/initpart.c:78:14: error: ‘METIS_OPTION_DROPEDGES’ undeclared (first use in this function); did you mean ‘METIS_OPTION_TPWGTS’? 78 | moptions[METIS_OPTION_DROPEDGES] = 1; | ^~~~~~~~~~~~~~~~~~~~~~ | METIS_OPTION_TPWGTS /home/XXX/ParMETIS/libparmetis/initpart.c:79:14: error: ‘METIS_OPTION_ONDISK’ undeclared (first use in this function); did you mean ‘METIS_OPTION_CONTIG’? 79 | moptions[METIS_OPTION_ONDISK] = 1; | ^~~~~~~~~~~~~~~~~~~ | METIS_OPTION_CONTIG make[3]: *** [libparmetis/CMakeFiles/parmetis.dir/build.make:289: libparmetis/CMakeFiles/parmetis.dir/initpart.c.o] Error 1 make[3]: Leaving directory '/home/XXX/ParMETIS/build/Linux-x86_64' make[2]: *** [CMakeFiles/Makefile2:145: libparmetis/CMakeFiles/parmetis.dir/all] Error 2 make[2]: Leaving directory '/home/XXX/ParMETIS/build/Linux-x86_64' make[1]: *** [Makefile:139: all] Error 2 make[1]: Leaving directory '/home/XXX/ParMETIS/build/Linux-x86_64' make: *** [Makefile:62: install] Error 2

phlagada avatar Jun 09 '23 13:06 phlagada

Hi, @phlagada , was facing the same error. A probable cause for this is that you've used sudo apt install to install METIS. This, I think installs an older version of METIS instead which does not contain

typedef enum {
  METIS_OPTION_PTYPE,
  METIS_OPTION_OBJTYPE,
  METIS_OPTION_CTYPE,
  METIS_OPTION_IPTYPE,
  METIS_OPTION_RTYPE,
  METIS_OPTION_DBGLVL,
  METIS_OPTION_NIPARTS,
  METIS_OPTION_NITER,
  METIS_OPTION_NCUTS,
  METIS_OPTION_SEED,
  METIS_OPTION_ONDISK,
  METIS_OPTION_MINCONN,
  METIS_OPTION_CONTIG,
  METIS_OPTION_COMPRESS,
  METIS_OPTION_CCORDER,
  METIS_OPTION_PFACTOR,
  METIS_OPTION_NSEPS,
  METIS_OPTION_UFACTOR,
  METIS_OPTION_NUMBERING,
  METIS_OPTION_DROPEDGES,
  METIS_OPTION_NO2HOP,
  METIS_OPTION_TWOHOP,
  METIS_OPTION_FAST,

  /* Used for command-line parameter purposes */
  METIS_OPTION_HELP,
  METIS_OPTION_TPWGTS,
  METIS_OPTION_NCOMMON,
  METIS_OPTION_NOOUTPUT,
  METIS_OPTION_BALANCE,
  METIS_OPTION_GTYPE,
  METIS_OPTION_UBVEC
} moptions_et;

So, reinstall metis by cloning the git repo and following the instructions on the readme. For me, once I did that, it worked fine.

Barenya255 avatar Aug 27 '23 12:08 Barenya255

Hi @Barenya255, I had left this issue on the back burner... Thanks a lot for your reply, I have followed your recommendation and this has worked fine for me too.

Perhaps one thing worth mentioning: installation is successful with the 'gdb' flag set to 1. But, trying with the 'debug' flag set to 1 [I don't need it, actually...], I got two warnings (which were treated as errors): /home/XXX/metis/libmetis/kwayfm.c: In function ‘libmetis__Greedy_McKWayCutOptimize’: /home/XXX/metis/libmetis/kwayfm.c:954:46: error: ‘to’ may be used uninitialized in this function [-Werror=maybe-uninitialized] 954 | +1, pwgts+toncon, pijbm+toncon)) | ~~^~~~~ /home/XXX/metis/libmetis/kwayfm.c: In function ‘libmetis__Greedy_McKWayVolOptimize’: /home/XXX/metis/libmetis/kwayfm.c:1305:45: error: ‘to’ may be used uninitialized in this function [-Werror=maybe-uninitialized] 1305 | +1, pwgts+toncon, pijbm+toncon)) | ~~^~~~~

phlagada avatar Aug 29 '23 08:08 phlagada

if you build with cmake [...] -D CMAKE_C_FLAGS="-D_POSIX_C_SOURCE=199309L" [...] or make config [...] CONFIG_FLAGS="-D CMAKE_C_FLAGS=-D_POSIX_C_SOURCE=199309L"

you should be able to build without problem,

Its a POSIX version problem at least on centos7

Hi, using centos7, I met the same error. And I tried your method. However, I get.

rm -rf build/Linux-x86_64
mkdir -p build/Linux-x86_64
cd build/Linux-x86_64 && cmake /data/cjl/ASC/OpenCAEPoro_ASC2024-main/parmetis-4.0.3 -D CMAKE_C_FLAGS=-D_POSIX_C_SOURCE=199309L
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Error at CMakeLists.txt:26 (include):
  include could not find load file:

    METIS/GKlib/GKlibSystem.cmake


CMake Error at CMakeLists.txt:36 (add_subdirectory):
  add_subdirectory given source "METIS/libmetis" which is not an existing
  directory.


-- Configuring incomplete, errors occurred!
See also "/data/cjl/ASC/OpenCAEPoro_ASC2024-main/parmetis-4.0.3/build/Linux-x86_64/CMakeFiles/CMakeOutput.log".
make: *** [config] Error 1

Then I tried to set

mv metis METIS

and tried agin, I get

mkdir -p build/Linux-x86_64
cd build/Linux-x86_64 && cmake /data/cjl/ASC/OpenCAEPoro_ASC2024-main/parmetis-4.0.3 -D CMAKE_C_FLAGS=-D_POSIX_C_SOURCE=199309L
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for execinfo.h
-- Looking for execinfo.h - found
-- Looking for getline
-- Looking for getline - found
CMake Error at /data/cjl/ASC/OpenCAEPoro_ASC2024-main/parmetis-4.0.3/build/Linux-x86_64/CMakeFiles/CMakeTmp/CMakeLists.txt:13 (add_executable):
  Cannot find source file:

    METIS/GKlib/conf/check_thread_storage.c

  Tried extensions .c .C .c++ .cc .cpp .cxx .cu .m .M .mm .h .hh .h++ .hm
  .hpp .hxx .in .txx


CMake Error at /data/cjl/ASC/OpenCAEPoro_ASC2024-main/parmetis-4.0.3/build/Linux-x86_64/CMakeFiles/CMakeTmp/CMakeLists.txt:13 (add_executable):
  No SOURCES given to target: cmTC_fce98


CMake Error at METIS/GKlib/GKlibSystem.cmake:110 (try_compile):
  Failed to generate test project build system.
Call Stack (most recent call first):
  CMakeLists.txt:26 (include)


-- Configuring incomplete, errors occurred!
See also "/data/cjl/ASC/OpenCAEPoro_ASC2024-main/parmetis-4.0.3/build/Linux-x86_64/CMakeFiles/CMakeOutput.log".
make: *** [config] Error 1

Did you get the solution for this?

hiGiraffe avatar Dec 26 '23 04:12 hiGiraffe

@hiGiraffe Hope this will help you

CMakeLists.txt

Line4, Line5
set(GKLIB_PATH METIS/GKlib  -> set(GKLIB_PATH metis/GKlib 
set(METIS_PATH METIS  -> set(METIS_PATH metis

build-parmetis.sh: the absoluted path need to be replaced with yours

#!/bin/bash
make config prefix= CONFIG_FLAGS="-D CMAKE_C_FLAGS=-D_POSIX_C_SOURCE=199309L -DCMAKE_C_COMPILER=mpicc -DCMAKE_INSTALL_PREFIX="
make -j 16 
make install

metis/GKlib/GKlibSystem.cmake

L113
use absoluted path to replace ${GKLIB_PATH}/conf/check_thread_storage.c

galeselee avatar Dec 28 '23 05:12 galeselee

I am getting the following error on apple silicon

&& /opt/homebrew/bin/mpicc -Dparmetis_EXPORTS -I/Users/takis/Downloads/ParMETIS-main/include -I/usr/local/include -I/opt/homebrew/Cellar/metis/5.1.0/include -I/Users/takis/Downloads/ParMETIS-main/libparmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -framework Accelerate -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.2.sdk -mmacosx-version-min=14.1 -fPIC -MD -MT libparmetis/CMakeFiles/parmetis.dir/initpart.c.o -MF CMakeFiles/parmetis.dir/initpart.c.o.d -o CMakeFiles/parmetis.dir/initpart.c.o -c /Users/takis/Downloads/ParMETIS-main/libparmetis/initpart.c clang: warning: -framework Accelerate: 'linker' input unused [-Wunused-command-line-argument] /Users/takis/Downloads/ParMETIS-main/libparmetis/initpart.c:77:14: error: use of undeclared identifier 'METIS_OPTION_NIPARTS' moptions[METIS_OPTION_NIPARTS] = 1; ^ /Users/takis/Downloads/ParMETIS-main/libparmetis/initpart.c:78:14: error: use of undeclared identifier 'METIS_OPTION_DROPEDGES' moptions[METIS_OPTION_DROPEDGES] = 1; ^ /Users/takis/Downloads/ParMETIS-main/libparmetis/initpart.c:79:14: error: use of undeclared identifier 'METIS_OPTION_ONDISK'; did you mean 'METIS_OPTION_CONTIG'? moptions[METIS_OPTION_ONDISK] = 1; ^~~~~~~~~~~~~~~~~~~ METIS_OPTION_CONTIG /opt/homebrew/Cellar/metis/5.1.0/include/metis.h:270:3: note: 'METIS_OPTION_CONTIG' declared here METIS_OPTION_CONTIG, ^ 3 errors generated. make[3]: *** [libparmetis/CMakeFiles/parmetis.dir/initpart.c.o] Error 1 make[2]: *** [libparmetis/CMakeFiles/parmetis.dir/all] Error 2 make[1]: *** [all] Error 2 make: *** [install] Error 2

TakisCFD avatar Jan 19 '24 14:01 TakisCFD