SCHISM
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KarchinLab
Subclonal Hierarchy Inference from Somatic Mutations
Hi Niknafs: I try to use SCHISM to construct tree using data generated by Pyclone. It works fine for the first 5 steps in 'step through' mode but failed at...
Hello, it seems that there is a problem about the arguments related to matplotlib-v.2.2.3. I am attempting to test the E1 example with SCHISM-v.1.1.2. After modifying the absolute path in...
hi， I want to download the Cairo and PyCairo package, but i canot open the link:https://gist.github.com/Niknafs/6b50d9df9d5396a2e92e, how to solve it? thank you!
Is the config file a required argument? Might be nice to add required=True so that argparse catches this, or if there is default then put a default=XXX in the add_argument...
I saw in interesting github package that turns python command line tools into GUI's (https://github.com/chriskiehl/Gooey). Works by figuring out the inputs from argparse. Seems to work on SCHISM (didn't bother...
Looks like the "#" was dropped on several hex codes. Matplotlib doesn't like this.
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Subclonal Hierarchy Inference from Somatic Mutations