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This is the official Pytorch implementation of the paper "Diffusion Models for Implicit Image Segmentation Ensembles".

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![CleanShot 2024-04-07 at 23 55 10@2x](https://github.com/JuliaWolleb/Diffusion-based-Segmentation/assets/30612792/8ee1f75f-1467-4d95-84de-03490ddde8d3)

Hi, I want to know if i successfully begain training. ![WechatIMG383](https://github.com/JuliaWolleb/Diffusion-based-Segmentation/assets/101803575/7836b2d6-d52c-492b-bfa6-b160993b3cbc)

Can you tell me the code to convert the Brats2020 dataset into a dataset that can be directly trained as shown in this image? ![image](https://github.com/JuliaWolleb/Diffusion-based-Segmentation/assets/49418773/833b3f32-8d2a-4830-a013-715c94bc0ccd)

Would you please provide some checkpoints you trained?

Hi @JuliaWolleb , thank you for your great work. I want to solve the multi-class segmentation problem and I delete the "label = torch.where(label > 0, 1, 0).float()". Now, I...

I initialized the multiple training using torchrun, but it stuck here. Setting up a new session... Setting up a new session... Setting up a new session... Does anyone have an...

Why do you give the image_size flag value 256 when the slices are of size 240x240?

Hi, thank you for sharing this code. I was wondering why in this line of the gaussian diffusion condition score you are multiplying the right side by zero: https://github.com/JuliaWolleb/Diffusion-based-Segmentation/blob/676f214035e90edd0357f51feab45841e4aefcfb/guided_diffusion/gaussian_diffusion.py#L387 In...

Hello there, If the testing set does not have any segmentation mask (ground truth), then how are we going to calculate the Dice and IoU (Jaccard Index) of the generated...

Hi, thank you again. I used the code to train my custom dataset pair dataset; (input image, target image). It works when I convert the dataset to grayscale, but it...