Adds kamada_kawai_layout, which uses the graph-theoretic distance as the equilibrium distance between two vertices. The starting point can be supplied or will be generated from a call to shell_layout with shells corresponding to successive next-neighbor shells starting with the highest degree vertex. Disconnected graphs are placed side by side.

Jun 20 '19 15:06 BCRARL

Codecov Report

Merging #89 into master will decrease coverage by 3.07%. The diff coverage is 0.00%.

@@            Coverage Diff             @@
##           master      #89      +/-   ##
==========================================
- Coverage   32.02%   28.95%   -3.08%     
==========================================
  Files           9       10       +1     
  Lines         509      563      +54     
==========================================
  Hits          163      163              
- Misses        346      400      +54

Impacted Files	Coverage Δ
src/KamadaKawai.jl	`0.00% <0.00%> (ø)`
src/layout.jl	`44.82% <ø> (ø)`

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Jun 24 '19 17:06 codecov[bot]

I incorporated the comments as seemed appropriate. Optim is part of JuliaOpt. Putting in an independent non-linear optimization implementation is not a good use of time and resources. I haven't added any tests as I am unfamiliar with how that works for visualizations.

Jun 24 '19 17:06 BCRARL

@simonschoelly I've addressed most of your concerns, I belive. Is there anything in particular holding back the inclusion?

Jul 29 '19 12:07 BCRARL

@simonschoelly, any thoughts on this PR. It seems that @BCRARL addressed the review points back in 2019.

Jul 25 '22 18:07 hdavid16

Kamada kawai

Codecov Report