Some uniGWAS Top SNPs lost after MTAG

Open Kai6662 opened this issue 5 years ago • 1 comments

Hi, I compared my MTAG and UniGWAS's results. I found some top SNPs were gone after mtag. Do you know what is it mean? Thanks/ Best regards, Kai

Jan 15 '21 11:01 Kai6662

Hello Kai,

There are a number of filters that MTAG uses based on things like allele frequency, sample size, and other things like that. I believe that the log file describes how many SNPs are being dropped by each filter. I'd check that out.

Best, Patrick

On Fri, Jan 15, 2021 at 6:49 AM Kai6662 [email protected] wrote:

Hi, I compared my MTAG and UniGWAS's results. I found some top SNPs were gone after mtag. Do you know what is it mean? Thanks/ Best regards, Kai

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Jan 15 '21 15:01 paturley