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"RuntimeError: ConnectionPool is closed" when registration

Open azzhu opened this issue 2 years ago • 0 comments

Bug report

Description of the problem

Data information: total 16 tiles the dimensions of each tile is [1920,1920,1099] datatype:uint16 the pixel resolution is [0.23,0.23,0.42] sum size of two rounds is about 1T each round has four channels "c0,c1,c2,c3" the dapi channel is "c0"

When I skipped other modules and just run registration, an error had occurred:

Log file(s)

1 2 3 4

Environment

  • EASI-FISH Pipeline version: [dev]
  • Nextflow version: [23.04.1]
  • Container runtime: [Singularity]
  • Platform: [Slurm]
  • Operating system: [CentOS 7.6]

Additional context

(Add any other context about the problem here)

azzhu avatar Nov 27 '23 01:11 azzhu