SnapGeneFileReader
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IsaacLuo
A Python project to read and write Snapgene *.dna into dict, json, and biopython object.
Hello, Really nice library, I was wondering if you could give some hint on how to decode the history of the files. I see that the byte indicator is number...
Hello, I am using snapgene_reader to extract the plasmid name and length from a list of files to populate a database. I have been using it for a while without...
In the following code in the readme file: ``` from snapgene_reader import snapgene_file_to_dict, snapgene_file_to_seqrecord file_path = './snap_gene_file.dna' dictionnary = snapgene_file_to_dict(filepath) seqrecord = snapgene_file_to_seqrecord(filepath) ``` the following two lines can be...
``` from snapgene_reader import snapgene_file_to_dict, snapgene_file_to_seqrecord from Bio.Seq import Seq file_path = "/cluster/facility/hlhuang/zifeng001/snapgene/LMB.dna" dictionary = snapgene_file_to_dict(file_path) seqrecord = snapgene_file_to_seqrecord(file_path) for i, value in dictionary.items(): # print(value) if isinstance(value, list): #...
Since the `*.dna` improve the storage of history trees, they compressed the xml tags after the version of 5.0. I recommend decompress the hex string to read the history of...
