No output

[Jolleboll]

Hello, I'm running GAV on the input/output of the example bundled with the latest ExpansionHunter. It runs in 1 second without errors but no output, no output whatsoever, anywhere. Any ideas?

python3 ~/Programs/GraphAlignmentViewer-master/GraphAlignmentViewer.py --variant_catalog $(realpath ../variants.json) --read_align $(realpath ../../output/rr.sorted.bam) --gt_file $(realpath ../../output/repeats.json) --output_dir .

pip3 list | grep -i 'pyyaml\|pysam\|matplotlib\|numpy' matplotlib 3.3.4
numpy 1.19.5
pysam 0.18.0
PyYAML 6.0

GAV has no --version option, and there is no version mentioned in any of its scripts, but I am using the latest version as of last week.

Grateful for help!