Error in minimal_optical_simulation.py

[hhapk]

Describe the bug Error is TypeError: _stack_dispatcher() got an unexpected keyword argument 'dtype' when runing minimal_optical_simulation.py. .

Specify a priority (low, medium, high) medium

To Reproduce Steps to reproduce the behavior:

1. Setup python '3.9', pytorch 1.12.1
2. Setup virtual environment
3. Install SIMPA 'v0.8.20'
4. Run SIMPA script 'Run minimal_optical_simulation.py in Pycharm IDE'
5. See error

Current Behavior minimal_optical_simulation.py break off

Expected behavior finish running minimal_optical_simulation.py

Screenshots If applicable, add screenshots to help explain your problem.

Environment (please complete the following information):

• OS: [Ubuntu 18.04.5 LTS]
• SIMPA version [0.8.20] and git commit hash if possible
• IDE [Pycharm]

Additional context Add any other context about the problem here, e.g. possible solution(s).

[kdreher]

What numpy version do you have? The dtype argument was introduced in numpy version 1.24.0

[hhapk]

Thank you! The codes could run after installed the numpy==1.24.0. But I have encountered a new problem. Problem:No such file or directory: './workplace/data/MyVolumeName_471_output.mc2'. Is the mcx can't produce the 'MyVolumeName_471_output.mc2'? or 'MyVolumeName_471_output.mc2' was produced in other path, because i could not make files in the workspace in public servers

[faberno]

Thats because MCX recently made jnii the default file format. Theres already a pr to fix this, but it's not merged yet.

[kdreher]

This issue should be resolved by now