pyPESTO
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Feature separate likelihood and prior
- [x] add
get_negloglikelihoodandget_neglogposteriorin all the different objectives. - [x] Go through samplers, and adapt them, if null & prior are needed separately
- [x] remove
problem.x_priors - [x] Adapt tests...
Codecov Report
Merging #779 (a000222) into develop (972f934) will decrease coverage by
43.29%. The diff coverage is31.25%.
@@ Coverage Diff @@
## develop #779 +/- ##
============================================
- Coverage 90.02% 46.73% -43.30%
============================================
Files 98 98
Lines 6888 6954 +66
============================================
- Hits 6201 3250 -2951
- Misses 687 3704 +3017
| Impacted Files | Coverage Δ | |
|---|---|---|
| pypesto/objective/aesara.py | 0.00% <0.00%> (-92.93%) |
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| pypesto/petab/importer.py | 89.56% <ø> (ø) |
|
| pypesto/problem.py | 69.49% <ø> (-22.13%) |
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| pypesto/sample/emcee.py | 28.30% <0.00%> (-69.82%) |
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| pypesto/sample/metropolis.py | 26.02% <0.00%> (-71.31%) |
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| pypesto/sample/pymc3.py | 33.33% <0.00%> (-60.52%) |
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| pypesto/objective/util.py | 54.16% <15.00%> (-35.49%) |
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| pypesto/objective/aggregated.py | 67.18% <40.00%> (-32.82%) |
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| pypesto/objective/finite_difference.py | 18.29% <42.85%> (-75.85%) |
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| pypesto/objective/function.py | 75.20% <42.85%> (-19.72%) |
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| ... and 72 more |
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