DriverML
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HelloYiHan
Hello, I am having trouble running this program. I just keeping getting the output that explains how to run the program. I am using the usage command provided: ``` USAGE:path/run.driverml.sh...
Each time I'm getting Segmentation error (core dump) at #manipulate data format . . . . $path/reduction.pl -i ${date_pre}_subclass-$p.tmp -g ${path}/hg19_refGene.exp -f $reference_training step or Error msg: /home/ubuntu/driverml/DriverML/run.driverml.sh: line 213:...
Error!
Hi, When we are trying to execute DriverML with the Example dataset its throwing the error please have a look, > sh DriverML-master/run.driverml.sh -w DriverML-master -i DriverML-master/example/UVM.txt -f hg38.fa -r...
Hello All, Thanks a lot for building such a wonderful tool for driver mutation identification. We wanted to try out this in our lab on the cancer sample dataset. Going...
Hi, Thanks a lot for the contribution to DriverML, which is an amazing algorithm to determine driver mutations, but I met some fatal problems when running it. Following the manual...
When Running DriverML, I get the following error even after using the absolute path. [combined_mak.txt](https://github.com/HelloYiHan/DriverML/files/10684788/combined_mak.txt) Please help ``` ./run.driverml.sh -w /mnt/d/2046llc/CancerPipe/test/mskcc-vcf2maf-754d68a/DriverML -i /mnt/d/2046llc/CancerPipe/test/mskcc-vcf2maf-754d68a/DriverML/combined_mak.txt -f /mnt/d/2046llc/CancerPipe/resources/chrM.fasta -r /mnt/d/2046llc/CancerPipe/resources/resources_broad_hg38_v0_Homo_sapiens_assembly38.fasta -o rohit Final...
I used full path for the directory as below but there is problem of reading the files `/media/hp/DATa/tools/DriverML-master/run.driverml.sh -w /media/hp/DATa/tools/DriverML-master -i /media/hp/DATa/Pancreatic/WGS/Somatic_pairedSample/MAF_Somatic/driverInput.maf -f /media/hp/DATa/Ref/GRCh38.p14.genome.fa -r /media/hp/DATa/Ref/GRCh38.p14.genome.fa -o /media/hp/DATa/Pancreatic/WGS/Somatic_pairedSample/DriverMutation/SomaticDriver` The errors...
I have run DriverML with my variant data which was previously annotated using Funcotator2 I manually changed the variant classification further to match the terms prescribed in your documentation (Silent,...
