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when running sampledata, 'can’t have more folds than instances'

Open woonh opened this issue 5 years ago • 0 comments

Hello :) First of all, thank you for developing this good pipeline. I installed CancerDiscover on linux server and now I am trying to run the pipeline with provided SampleData. There are total 10 CEL files provided. (5 are normal, other 5 are tumor). Then I edited configuration file ( data partitioning : 5 folds)

image

When running masterScript_2.bash, I encountered the following message -

can't have more folds than instances image

As far as I understand, number of instances are 10 (CEL files), then 5 fold is fine to run. I also tried 2 fold, but the program produced same error.

Could you kindly help me how I could fix this?

woonh avatar May 26 '20 12:05 woonh