chromVARmotifs
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GreenleafLab
R package with motifs for use with chromVAR
Hello I would like to know details on the curation process for the PWMs provided in the human_pwms_v1 dataset. Many thanks -Burak
Only a subset of homer motifs is available in this package (332 out of 436). I would highly appreciate it if the script used to convert homer motifs into PWM...
HI When I installed it on my linux server, I received an error message: `No methods found in package'IRanges' for request:'score' when loading'TFBSTools'`. How to solve it?
With the exception of added redundancies and computational time for motif_ix, is there anything wrong with doing this? ``` library(BSgenome.Hsapiens.UCSC.hg18) library(chromVARmotifs) library(TFBSTools) data("homer_pwms") data("encode_pwms") data("human_pwms_v2") motifs
Dear Team ChromVAR, Your tools have been wonderful for our research. I’m wondering if there is any tool I can use to construct a PWMatrix list from a local transfac...
Tried to install the package following the instruction. It gave several Rd warnings. Please see detail logs below. The result is that all the pwms data are empty when I...
