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can I use ArchR for single cell ChIP-seq?

Open sotuamax opened this issue 1 year ago • 0 comments

Hi,

I am aware of that the ArchR package was developed primarily for the analysis of large scale scATAC-seq. Just out of curiosity, if this package is appropriate for the analysis of single cell ChIP-seq data. For example, for single cell ChIP-seq intentionally to capture a specific transcription factor binding sites? the genome-wide tile matrix can be even sparser compared to scATAC-seq.

Many thanks!

Best, Meiyuan

sotuamax avatar May 20 '24 18:05 sotuamax