sg-nex-data
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GoekeLab
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
I#m having trouble to understand the naming convention of samples. Some cell lines have missing replicates (e.g. only 1,5,6) and some replicates have only run1 or run2. Would greatly appreciate...
Dear developers, first of all, thanks a ton for this wonderful resource! With the recent release of the RNA004 kit, do you also plan to make some RNA004 data available...
I tried: aws s3 sync --no-sign-request s3://sg-nex-data/data/sequencing_data_ont/fastq/sample_name . but there is no download happening? Not sure what I#m missing.
Hi team, I have downloaded some cDNA fastq files from you s3 repo. I found 2 files are not correctly formatted when I run QC with NanoPlot. ``` SGNex_MCF7_cDNAStranded_replicate2_run1/SGNex_MCF7_cDNAStranded_replicate2_run1.fastq.gz SGNex_K562_cDNAStranded_replicate3_run3/SGNex_K562_cDNAStranded_replicate3_run3.fastq.gz...
Hi, thank you for providing such a wonderful resources to the community. I am trying to analyze the data to compare performance of multiple quantification program. To do that, I...
Hello! I want to explore m6Anet using the SG-NEx dataset with preprocessed data for m6Anet. However, it appears that this dataset lacks the data.info component. Could you please guide how...
Thank you for this amazing resource. On the AWS landing page it sounds like there are tissue samples processed but I only seem able to find cell lines sequenced? Apologies...
Hi, We (@zzare-umd, @NPSDC, and I) are trying to do some analysis of different transcript identification and quantification tools using the benchmarking data you're providing through this project. As some...
Hi, I wanted to check if I can get a download option for expression data plotted in the image Supplementary Fig. 7 - (d) **Supplementary Fig. 7** Long read RNA-Seq...
Hi, I cant seem to find any pacbio isoseq data (ideally bam) from recent (yesterday!) paper "A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell...
