MSPC

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Bump got, @docusaurus/core, @docusaurus/preset-classic and @docusaurus/theme-search-algolia in /website

1

Bumps [got](https://github.com/sindresorhus/got) to 12.6.1 and updates ancestor dependencies [got](https://github.com/sindresorhus/got), [@docusaurus/core](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus), [@docusaurus/preset-classic](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus-preset-classic) and [@docusaurus/theme-search-algolia](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus-theme-search-algolia). These dependencies need to be updated together. Updates `got` from 9.6.0 to 12.6.1 Release notes Sourced from...

dependabot[bot]

Bump axios, @docusaurus/core, @docusaurus/preset-classic and @docusaurus/theme-search-algolia in /website

1

Removes [axios](https://github.com/axios/axios). It's no longer used after updating ancestor dependencies [axios](https://github.com/axios/axios), [@docusaurus/core](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus), [@docusaurus/preset-classic](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus-preset-classic) and [@docusaurus/theme-search-algolia](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus-theme-search-algolia). These dependencies need to be updated together. Removes `axios` Updates `@docusaurus/core` from 2.3.1 to 3.1.0...

dependabot[bot]

- [ ] Update documentation on how to add MSPC to each OS's `PATH`; - [ ] Add a check in the wrapper to assert if MSPC is installed and...

VJalili

Automatic threshold determination

10

Hi, is there a systematic way to find meaningful cutoffs for -s/-w? How do you decide on these? Best, Carsten

ckuenne

I think it would be great to add an automatic filtering of known artifacts, such as the ones present in [ENCODE blacklists](https://sites.google.com/site/anshulkundaje/projects/blacklists). > Functional genomics experiments based on next-gen sequencing...

marziacremona

Bumps [http-proxy-middleware](https://github.com/chimurai/http-proxy-middleware) from 2.0.7 to 2.0.9. Release notes Sourced from http-proxy-middleware's releases. v2.0.9 What's Changed fix(fixRequestBody): check readableLength by @​chimurai in chimurai/http-proxy-middleware#1097 chore(package): v2.0.9 by @​chimurai in chimurai/http-proxy-middleware#1099 Full Changelog:...

dependabot[bot]

Bumps [estree-util-value-to-estree](https://github.com/remcohaszing/estree-util-value-to-estree) from 3.2.1 to 3.3.3. Release notes Sourced from estree-util-value-to-estree's releases. v3.3.3 652e019 Use singular Object.defineProperty if possible d0c394f Fix __proto__ property emit Full Changelog: https://github.com/remcohaszing/estree-util-value-to-estree/compare/v3.3.2...v3.3.3 v3.3.2 6ecf349 Move...

dependabot[bot]

Bumps [image-size](https://github.com/image-size/image-size) from 1.2.0 to 1.2.1. Release notes Sourced from image-size's releases. v1.2.1 Fixes fix potential Denial of Service via specially crafted payloads in https://github.com/image-size/image-size/commit/640a67d9e821baee4cb596def8db00627f649dfc Full Changelog: https://github.com/image-size/image-size/compare/v1.2.0...v1.2.1 Commits a4178fb...

dependabot[bot]

Bumps [prismjs](https://github.com/PrismJS/prism) from 1.29.0 to 1.30.0. Release notes Sourced from prismjs's releases. v1.30.0 What's Changed check that currentScript is set by a script tag by @​lkuechler in PrismJS/prism#3863 New Contributors...

dependabot[bot]

Direct assignment of parser arguments

3

I am rather confused about how MSPC handles the p-values of the input bed files, particularly for MACS, as the score column is actually the -log10(qvalue)*10 as [specified in their...

j-andrews7