psborrow2 icon indicating copy to clipboard operation
psborrow2 copied to clipboard

Regarding the data_simulation.Rmd file

Open zhiiiyang opened this issue 1 year ago • 0 comments

Hi, I have a few thoughts about improving the vignette data_simulation.Rmd file for your consideration.

  • [ ] add some texts to explain how to convert median survival time to lambda in the create_event_dist function. It would be something like lambda is equal to log(2)/median survival time, e.g., if survival time is equal to 24 months, lambda is set to be log(2)/24. https://github.com/Genentech/psborrow2/blob/5123a8c6149ced68e09abc7cfd47ca4077de8f5e/vignettes/data_simulation.Rmd#L213

  • [ ] remove the lines associated with external control in the section " Using fixed external data" https://github.com/Genentech/psborrow2/blob/5123a8c6149ced68e09abc7cfd47ca4077de8f5e/vignettes/data_simulation.Rmd#L582-L600

  • [ ] only count the number of events for cut_off_after_events described in https://github.com/Genentech/psborrow2/issues/279 https://github.com/Genentech/psborrow2/blob/5123a8c6149ced68e09abc7cfd47ca4077de8f5e/R/simulate_data.R#L328

  • Using a cutoff value to dichotomize a continuous variable to a binary variable is not needed since it is pretty straightforward for users to do it instead.

  • I just noticed that you have introduced enrollment_constant function in earlier sections so I think the additional texts are not needed then.

zhiiiyang avatar Mar 27 '24 20:03 zhiiiyang