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indicate stop codon in sequence when CDS is being color for phase

Open nathandunn opened this issue 5 years ago • 2 comments

in draggable HTMLFeatures, indicate stop codon in phase with an orange or yellow line (or asterisk) if in phase stop codon present.

Note: #1852 , https://github.com/GMOD/Apollo3Server/issues/76 , and https://github.com/GMOD/Apollo3Server/issues/75

nathandunn avatar Jan 30 '21 22:01 nathandunn

setting longest ORF does set and fix to the approiate ending CDS

nathandunn avatar Feb 03 '21 22:02 nathandunn

This is slightly problematic in that the CDS (and frame) is drawn in DraggableHTMLFeatures using retrieved exon and cds boundaries.

The sequence is stored in the sequencetrack.

Getting the frame out and redrawing in another is going to be a mess at this point. Moving to JB2 code-base.

nathandunn avatar Feb 03 '21 23:02 nathandunn