ea-utils issues

Failed test: make: *** [check] Error 1 on Mac(Mojave10.14.2)

2

Hi, I tried to build with： `make` but I got this: > prove -j 4 t > ===( 2;0 1/? 1/? 0/? )========================================= > \# Failed test 'Files equal: tmp/join.t.XBUTj/test-phred.out...

ghost

fastq-multx not identifying barcodes

8

I have a fastq file with 1.7 million reads of 75 bps, and 28 different barcodes. My command: ``fastq-multx -l barcodes.txt all_samples.fastq -e -o %.fq -x" Part of my barcode...

SJRussell

Version conflict issue

Hi, I am trying to understand which version of eautils is latest release. I found that the version mentioned in anaconda is 1.1.2.779 , but the metadata.yml points to source...

shubhambasu

Sparsehash update recommendation

Hey there folks, I would suggest you switch to the C++11 version of sparsehash @ https://github.com/sparsehash/sparsehash-c11 it's header only

PhilipDeegan

Nextera/Dual Indexed input demultiplexing

Hi, I'm trying to demultiplex Nextera/Dual-Indexed input. I've provided a file like in example 2, but I get this error: "Segmentation fault: 11" Do you know what could be the...

amr15

fastq-mcf sink into dead circulation when getopt_long

When I run fastq-mcf with the following command: ./fastq-mcf /home/adapters/TruSeq3-PE.fa /home/data/test.read1.fq , it seems the program sink into dead circulation. I use gdb to debug what happened, then navigate to...

songdongmei

Segmentation fault and core dump

1

Hello- I'm getting this error repeatedly with the same script/type of data that has worked in the past. Others point out that segfaults tend to have to do with access...

carlyraea

installing and building fastq-join on a linux server.

6

Hello, I am new to the command line and would appreciate help getting started with fastq-join. Can anyone give direction for how to install and build ea-utils on a linux...

tbranck28