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Sleep gui does not open

3

Hi EtienneCmb, I am trying the 'Load matlab file' example. But when the Sleep gui launches it freezes and does not show anything or respond. I am using JupyterLab on...

mtantirigama

Is there a way to control transparency of brain objects other than translucent flag? The translucent flag yield the inflated surface invisible and also affects any overlay which is not...

mabdelhack

Hi, I was wondering if there is a way to extract coordinates of the parcellations on the surface. I am doing ROI-based connectivity and would like to plot the connectivity...

mabdelhack

URLError: <urlopen error [WinError 10054] The current connection was forcibly disconnected by the remote host.>

1

http://visbrain.org/auto_examples/gui_sleep/load_edf.html#sphx-glr-auto-examples-gui-sleep-load-edf-py ----> 5 download_file('sleep_edf.zip', unzip=True, astype='example_data')

PhD-GOAT

Brain GUI screenshot issue

12

Hi visbrain, I'm preparing figures for publication by saving screenshots (tried both GUI and programming) from Brain GUI. However, I found some shadows on cortical surfaces from saved figures. To...

miao-cao

VolumeObj not working but no explicit error

3

Hello, I am interested in a library that I could integrate to my small python toolbox and that would be capable of taking 3D screenshot from several nifti files. Visbrain...

Vince-LD

I opened https://github.com/raphaelvallat/yasa/issues/50#issue and the same improvement could be done [here](https://github.com/EtienneCmb/visbrain/blob/b599038e095919dc193b12d5e502d127de7d03c9/visbrain/utils/sleep/event.py), too. The idea is to avoid for loop, which takes more time than numpy ufuncs, especially when the number...

snwnde

If I run a Sleep session, close it, then attempt to run another, it crashes with the following error message: > WARNING: Unrecognized OpenGL version WARNING: Unrecognized OpenGL version Segmentation...

jshanna100

repeated labels in AAL ROI

2

Hi, I just using aal atlas with visbrain, and I just found there are two repeated labels in aal.npz, The code is ``` import numpy as np aal = np.load('aal.npz',...

ZhengL97

docstring: https://github.com/EtienneCmb/visbrain/blob/b2214ea693cd71e8fd7d894f2c240005831bbdd0/visbrain/utils/color.py#L656-L657 relevant code: https://github.com/EtienneCmb/visbrain/blob/b2214ea693cd71e8fd7d894f2c240005831bbdd0/visbrain/utils/color.py#L685-L686 Let's say we want the opacity to range from 0.5 to 1.0: `dyn=(0.5, 1.0)` If `clim[0]` is a small number, smaller than `_data.min()/2`, then `xtr_min`...

cboulay