Some problems from the results

Open DrDinhLuong opened this issue 8 months ago • 1 comments

Dear EnzoAndree I run in terminal, and the result gave me this notification below:

We instead now recommend building your command line and invoking it directly with the subprocess module. warnings.warn( There is no result for: blastn -outfmt "6 sseqid slen sstrand sstart send length nident gaps qseqid qstart qend" -db /opt/anaconda3/lib/python3.12/site-packages/fastmlst/pubmlst/mlst.fasta -evalue 1e-20 -max_target_seqs 130000 -dust no < MRSA001_contig.fa

Can you help me why i had this issue. BW

May 14 '25 05:05 DrDinhLuong

me too, same code coulde be run in last month, but similar warnings appera. Scanning Genomes using 10 threads: 0%| | 0/486 [00:00<?, ?Genomes/s][13:30:56] WARNING@mlst: There is no result for: blastn -db /home/chenl/.cache/fastmlst/pubmlst/mlst.fasta -dust no -outfmt 6 sseqid slen sstrand sstart send length nident gaps qseqid qstart qend -max_target_seqs 130000 -evalue 1E-20 -ungapped < fasta/DS24DTH32_TT190_L7_Q0584W0318.fasta

What is wrong with it? no errors, but no results produced.

May 23 '25 06:05 chen318liang