Yoshiki Vázquez Baeza

Thanks @qiyunzhu! I can't close the issue but that solved the problem for MetaCyc. Thanks so much! 👍 Maybe worth making a note in the docs about this as a...

Oddly enough in our situation, the machine that works is a newer MacBook Pro (mid 2014), the machine that doesn't is an old MacBook Pro (mid 2012). On (Sep-28-16| 9:31),...

Thanks for pushing in those changes, however I'm still seeing the same problem. yoshikivazquezbaeza:SeqPrep@master$ git rev-parse HEAD 575507b0b9c94701bdf67bb592da8ba91ba9639c yoshikivazquezbaeza:SeqPrep@master$ ./SeqPrep -f small/rMK0LS1080_L001_R1_prime_001.fastq -s seqprep_assembled.fastq.gz -r small/rMK0LS1080_L001_R2_prime_001.fastq -y J -1 seqprep_unassembled_R1.fastq.gz...

@ArnaudGaudry that's interesting. Mathematically speaking Bray-Curtis is more similar to weighted UniFrac than it is to unweighted UniFrac. I don't remember seeing this plot, mainly because we knew the abundance-based...

In the past I've seen this error when there's a problem with CSI or the underlying tools being run. IIRC CSI sometimes fails due to connectivity issues. Can you try...

With this we should also be able to move to BSD, as we will no longer depend on cogent! On (Apr-21-15|10:34), Antonio Gonzalez wrote: > Going to wait for https://github.com/biocore/scikit-bio/issues/899...

Yes, this is absolutely a great idea. I think probably the best way is to create a new directory format (`SiriusWorkspacev440 ` or something like that). Then we can write...

Great, thanks @lfnothias. Any thoughts @anupriyatripathi?

Maybe we could always set java's temporary directory to be Python's temporary directory.

Should the config file for micronota be at the top level of the command? Or are these only really useful when annotating?