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Unexpected error: <class 'FileNotFoundError'>

Open zzzzzoeyy opened this issue 1 year ago • 0 comments

Unexpected error: <class 'FileNotFoundError'> Traceback (most recent call last): File "/Users/zhangluyao/anaconda3/bin/checkm", line 856, in checkmParser.parseOptions(args) File "/Users/zhangluyao/anaconda3/lib/python3.11/site-packages/checkm/main.py", line 980, in parseOptions self.lineageSet(options) File "/Users/zhangluyao/anaconda3/lib/python3.11/site-packages/checkm/main.py", line 261, in lineageSet treeParser.getBinMarkerSets(options.tree_dir, options.marker_file, File "/Users/zhangluyao/anaconda3/lib/python3.11/site-packages/checkm/treeParser.py", line 485, in getBinMarkerSets tree = dendropy.Tree.get_from_path(treeFile, schema='newick', rooting="force-rooted", preserve_underscores=True) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/zhangluyao/anaconda3/lib/python3.11/site-packages/dendropy/datamodel/basemodel.py", line 217, in get_from_path with open(src, *open_args) as fsrc: ^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/Users/zhangluyao/Downloads/checkm_data_2015_01_16/result/storage/tree/concatenated.tre'

zzzzzoeyy avatar Mar 21 '24 13:03 zzzzzoeyy