bootLibrariesFirst prevents app module configs from being loaded

[zoe-codez]

🐜 Bug description

Setting bootLibrariesFirst will cause app configs to not load at the same time as all the other configs, the registration appears to be happening too late in the lifecycle

📠 Reproduction steps

https://gist.github.com/zoe-codez/876557bcbe44deb8949eccc44e05be3e

🎙️ Additional details