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Module crash with sitk Error OutputLabel.nrrd does not exist

Open yh3ds opened this issue 7 years ago • 2 comments

While tryting to run DeepInfer with CT Bone Segmenter under 3D Slicer 4.8.1 (build myself), I get the following error and the process stops : sitk::ERROR: The file "LocalPath.deepinfer.tmp\OutputLabel.nrrd" does not exist.

yh3ds avatar Sep 12 '18 10:09 yh3ds

I have downloaded the new Slicer 4.10.1 and, while running DeepInfer with 'Prostate Gland Segmenter', I get the following errors and the process stops: RuntimeError: Exception thrown in SimpleITK ReadImage: D:\D\S\Slicer-4101-build\SimpleITK\Code\IO\src\sitkImageReaderBase.cxx:89: sitk::ERROR: The file "C:\Users\CCIG.deepinfer.tmp\OutputLabel.nrrd" does not exist.

@mehrtash @gpernelle @kmader @mpslxz Thank you.

mlmms avatar Feb 11 '19 10:02 mlmms

Same problem here using 3D Slicer 4.10.2 (Ubuntu 18.04). Running Slicer as sudo from the terminal did not fix the problem. The main problem lies here: [nrrd] nrrdSave: couldn't fopen("/home/deepinfer/data/OutputLabel.nrrd","wb"): Permission denied

Thus, the file cannot be created, and hence it doesn't exist later on.

andreped avatar Aug 07 '19 08:08 andreped