Genotyping of variants resulted from multi-sample Mutect2 (question)

[mkyriak]

Hello,

I would like to genotype variants detected with Mutect2. The variants were identified from targeted sequencing of high coverage (> 500x). Do you have any parameters to recommend for running graphtyper genotype with high coverage data? I tried --no_filter_on_coverage parameter but I am curious if you have any other suggestion,

Thank you in advance for your time!