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Add python 3.10 CI tests

Open Hexotical opened this issue 4 years ago • 1 comments

Changelog Entry

To be copied to the draft changelog by merger:

Add CI tests for python 3.10 to address issue #3819

Reviewer Checklist

  • [ ] Make sure it is coming from issues/XXXX-fix-the-thing in the Toil repo, or from an external repo.
    • [ ] If it is coming from an external repo, make sure to pull it in for CI with:
      contrib/admin/test-pr otheruser theirbranchname issues/XXXX-fix-the-thing
      
    • [ ] If there is no associated issue, create one.
  • [ ] Read through the code changes. Make sure that it doesn't have:
    • [ ] Addition of trailing whitespace.
    • [ ] New variable or member names in camelCase that want to be in snake_case.
    • [ ] New functions without type hints.
    • [ ] New functions or classes without informative docstrings.
    • [ ] Changes to semantics not reflected in the relevant docstrings.
    • [ ] New or changed command line options for Toil workflows that are not reflected in docs/running/{cliOptions,cwl,wdl}.rst
    • [ ] New features without tests.
  • [ ] Comment on the lines of code where problems exist with a review comment. You can shift-click the line numbers in the diff to select multiple lines.
  • [ ] Finish the review with an overall description of your opinion.

Merger Checklist

  • [ ] Make sure the PR passes tests.
  • [ ] Make sure the PR has been reviewed since its last modification. If not, review it.
  • [ ] Merge with the Github "Squash and merge" feature.
    • [ ] If there are multiple authors' commits, add Co-authored-by to give credit to all contributing authors.
  • [ ] Copy its recommended changelog entry to the Draft Changelog.
  • [ ] Append the issue number in parentheses to the changelog entry.

Hexotical avatar Dec 16 '21 21:12 Hexotical

Looks like it's failing because it's pulling in a pyparsing that's too old to work on 3.10. I think pyparsing comes from packaging, which we depend on transitively from somewhere. But since at some point we import packaging ourselves anyway, we could just add a dependency on packaging>=21.1, which would have https://github.com/pypa/packaging/commit/286458816562e119f15ea075d18d87ef1eb55988 and support 3.10 (presumably along with its dependencies). Then we could fix https://github.com/DataBiosphere/toil/issues/3617 at the same time.

adamnovak avatar Dec 17 '21 23:12 adamnovak