Cell state co-occurrence analysis

[ConDem94]

Hi,

Thank you for this amazing package. Is it possible to analyse the co-occurrence of variable cell states across cell types using the state theta values? Similar to various ecotype papers where they used CIBERSORTx for deconvolution and then correlation analysis, I was wondering if this is possible here.

Best wishes, Constantinos

[tinyi]

Hi Constantinos,

Thank you for your interest in our method.

Yes. The cell type fraction inferred by BayesPrism should be automatically compatible with all downstream analyses involving cell type fractions.

Best,

Tinyi

On Mon, Aug 26, 2024 at 4:48 PM ConDem94 @.***> wrote:

Hi,

Thank you for this amazing package. Is it possible to analyse the co-occurrence of variable cell states across cell types using the state theta values? Similar to various ecotype papers where they used CIBERSORTx for deconvolution and then correlation analysis, I was wondering if this is possible here.

Best wishes, Constantinos

— Reply to this email directly, view it on GitHub https://github.com/Danko-Lab/BayesPrism/issues/99, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB4NHSYHFQGRXHN3FKSMCULZTOIDJAVCNFSM6AAAAABNEYF2VGVHI2DSMVQWIX3LMV43ASLTON2WKOZSGQ4DONZVGQ3TQNQ . You are receiving this because you are subscribed to this thread.Message ID: @.***>