Fix bed file output's trailing tabs
Hi RGT devs, thank you for your valuable bioinformatic contribution to the regulatory genetics space. This issue pertains to multiple packages in RGT.
There is a trailing tab the bed outputs of footprinting step in HINT-ATAC and the motifanalysis function. While seemingly benign, software like bedtools would throw an error which inhibits users from further downstream analysis. Since this problem happens across different RGT packages, I am hesitant to fix everything at once and just want to notify everyone in general.
These trailing tabs can be viewed by cat -t <file.bed> | head. The following is the output of footprinting and motifanalysis, respectively:
footprinting

motifanalysis

Thanks, we'll have a look.