beast2 icon indicating copy to clipboard operation
beast2 copied to clipboard

StarBEAST has baked in prior on population sizes. There is no need for this.

Open alexeid opened this issue 5 years ago • 1 comments

SpeciesTreePrior currently takes a gammaParameter that is used to parameterize the prior on popSize parameters. It would be simple to make gammaParameter optional, and then the user would be free to put any prior they like on the popSize parameters separately.

alexeid avatar Jul 28 '20 02:07 alexeid

Since we are refactoring anyway, we should move to the StarBEAST2 implementation, which is faster and allows for species tree linked clock models & integrating out pop sizes. So, perhaps looking into the StarBEAST2 priors makes more sense.

rbouckaert avatar Aug 03 '20 07:08 rbouckaert