methrix
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CompEpigen
An R :package: for fast and flexible DNA methylation analysis
Hello, I am following the wonderfully detailed methrix tutorial, currently on section 2 (see https://compepigen.github.io/methrix_docs/articles/03-QC_reports.html), and I am trying to plot a PCA. The example command is: `methrix::plot_pca(mpca, m=meth, col_anno...
Hi, I am attempting to use get_region_summary with a very large methrix object (almost 400 human samples) and a GRanges object with about 80,000 regions and am finding that it...
what is missing are the info for the vignette etc.
Hey man ! Very cool plotly report ! I don't know if I am the only one to experience this, but the legend titles in some plot are cut out...
Some cosmetics: most graphs in the html report have no x and y axis labels.
Hi @tkik We should think of supporting ONT methylation files. An additional argument to `pipeline` to import modkit [output](https://github.com/nanoporetech/modkit?tab=readme-ov-file#bedmethyl-column-descriptions) would be an easier solution. Clarissa is also quite interested in...
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An R :package: for fast and flexible DNA methylation analysis