python-javabridge
python-javabridge copied to clipboard
CellProfiler
Python wrapper for the Java Native Interface
Import numpy at a stage where setup_requires has had time to install numpy. This allows installing the package into an empty virtualenv.
When some eldritch combination of things we do not yet understand occurs, [this line](https://github.com/CellProfiler/python-javabridge/blob/master/_javabridge.pyx#L652) calling `free(args.options)` barfs on Windows and breaks CellProfiler. Commenting out that line in a local installation...
Stack trace below, for both Cython 3 and 0.29.37 Cython3 ``` pip install python-javabridge Collecting python-javabridge Using cached python-javabridge-4.0.3.tar.gz (1.3 MB) Preparing metadata (setup.py) ... done Requirement already satisfied: numpy>=1.20.1...
Trying to install python-javabridge as part of a github actions for MacOS. For Windows/Linux, I do not have a problem but when running the tests on MacOS, I get the...
Hi, I got this error. For both python 3.12 and python 3.9 pip install python-bioformats Collecting python-bioformats Using cached python_bioformats-4.1.0-py3-none-any.whl.metadata (1.7 kB) Collecting boto3>=1.14.23 (from python-bioformats) Using cached boto3-1.36.3-py3-none-any.whl.metadata (6.6...
error: command 'gcc' failed with exit status 1 But when I install - python-javabridge-4.0.4 it works totally fine. What could be the problem?
After hitting a common installation issue and digging into the source, I found that `JDK_HOME` env var needs to be set. Current Java installers on Windows don't appear to set...
