CellProfiler
failed! pip install javabridge or python setup.py install (python version 3.11)
OSError: [Errno 66] Directory not empty: '/private/var/folders/n3/mp3zkg9x3gggwvp4gwd22fvm0000gn/T/pip-install-g3vz28yz/javabridge_b31f256aa97646a0b790c436b8b07c69/.eggs/Cython-3.0.2-py3.11-macosx-10.9-universal2.egg/Cython-3.0.2.dist-info' -> '/private/var/folders/n3/mp3zkg9x3gggwvp4gwd22fvm0000gn/T/pip-install-g3vz28yz/javabridge_b31f256aa97646a0b790c436b8b07c69/.eggs/Cython-3.0.2-py3.11-macosx-10.9-universal2.egg/EGG-INFO' [end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. error: legacy-install-failure
× Encountered error while trying to install package. ╰─> javabridge
You may want to try downgrading Cython first. We've had a few issues after they changed major version to 3.
Run pip install "Cython<3.0.0" first, and then try again.
I tried already ! then it started showing other files compatiablity issue.
like below
_javabridge.c:196:12: fatal error: 'longintrepr.h' file not found
#include "longintrepr.h"
^~~~~~~~~~~~~~~
1 error generated.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. error: legacy-install-failure
Ah, okay. That's specific to python 3.11. We are currently supporting python 3.8 and 3.9.
OSError: [Errno 66] Directory not empty: '/private/var/folders/n3/mp3zkg9x3gggwvp4gwd22fvm0000gn/T/pip-install-g3vz28yz/javabridge_b31f256aa97646a0b790c436b8b07c69/.eggs/Cython-3.0.2-py3.11-macosx-10.9-universal2.egg/Cython-3.0.2.dist-info' -> '/private/var/folders/n3/mp3zkg9x3gggwvp4gwd22fvm0000gn/T/pip-install-g3vz28yz/javabridge_b31f256aa97646a0b790c436b8b07c69/.eggs/Cython-3.0.2-py3.11-macosx-10.9-universal2.egg/EGG-INFO' [end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. error: legacy-install-failure
× Encountered error while trying to install package. ╰─> javabridge
have you solved this problem?
have you solved this problem?
Ah, okay. That's specific to python 3.11. We are currently supporting python 3.8 and 3.9.
have you solved this problem?