CellPose plugin error

[MikeLippincott]

After trying to run the runcellpose module I get the following error:

 File "/path/to/conda/env/lib/python3.8/site-packages/cellprofiler/gui/pipelinecontroller.py", line 3390, in do_step
    self.__pipeline.run_module(module, workspace_model)
  File "/path/to/conda/env/lib/python3.8/site-packages/cellprofiler_core/pipeline/_pipeline.py", line 1349, in run_module
    module.run(workspace)
  File "/path/to/CP.plugins/CellProfiler-plugins/active_plugins/runcellpose.py", line 612, in run
    if self.use_gpu.value and model.torch:
AttributeError: 'CellposeModel' object has no attribute 'torch'

I had to change line 567 of runcellpose.py to

if self.use_gpu.value and model.gpu:

and line 612 of runcellpose.py to

if self.use_gpu.value and model.gpu:

I can open a PR to fix these.

I will also open an issue on the CellPose repo requesting less drastic API changes in minor version changes or no version changes.

[MikeLippincott]

Note: these changes would be for newer versions of CellPose > 3.1.0

[jamila-griffith]

So did you make that working?

[ErinWeisbart]

Thanks @MikeLippincott for the suggested workaround. In dc49fe3 I took out the and model.torch so that we don't have to distinguish between minor versions of Cellpose. This will be merged in with #276

[MikeLippincott]

Thanks @MikeLippincott for the suggested workaround. In dc49fe3 I took out the and model.torch so that we don't have to distinguish between minor versions of Cellpose. This will be merged in with #276

@ErinWeisbart et al. on this work: This is amazing! Thank you for your time and energy! :)