CellProfiler-plugins icon indicating copy to clipboard operation
CellProfiler-plugins copied to clipboard

Error in sys.excepthook while running cellprofiler in headless mode with CellPose as a plugin

Open bethac07 opened this issue 3 years ago • 2 comments

H/T the forum. CellProfiler is running but not disengaging nicely. Can anyone verify?

bethac07 avatar Sep 01 '22 13:09 bethac07

I am currently running into something similar with exporttodatabase. When I check the database file however it is empty. With some fiddling I got one of my batches to show some data. I noticed at the beginning of the run in an output file it says that the table exporting to my database already exists. I am running multiple batches, and I think the file is either being overwritten or stopped from being written because the tables exported all have the same name.

Screenshot 2024-07-19 at 7 09 25 AM

I am also adding a screenshot of the output file I have generated. Screenshot 2024-07-19 at 7 02 45 AM

I also found this post describing something similar to what I am seeing here:

https://forum.image.sc/t/nointeractionexception-in-exporttodatabase-with-sqlite/88579

tsmith1711 avatar Jul 19 '24 11:07 tsmith1711

I am running the omnipose plugin not cellpose but I believe that it is just a model within the cellpose feature.

tsmith1711 avatar Jul 19 '24 11:07 tsmith1711