CellProfiler-Analyst
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Tracer appears to break if JAVA_HOME environment variable not set
Not sure what happened but I got this error again: https://github.com/CellProfiler/python-javabridge/issues/50. Setting JAVA_HOME "fixed" it.
I encountered the same problem when building CPA. JAVA_HOME should be set, otherwise it is not possible to run
pip install javabridge
Via Mac best set with
export JAVA_HOME=$(/usr/libexec/java_home)
Is further work needed here?
Probably should be documented somewhere, perhaps on the Tracer page (and the CPA dev wiki page if required for building CPA from source as well)