scTDA icon indicating copy to clipboard operation
scTDA copied to clipboard
verified publisher icon CamaraLab

Planned enhancements

Open pcamara opened this issue 8 years ago • 1 comments

Some planned enhancements in scTDA (in random order):

  • Compatibility with Python 3 (through six)
  • Improve performance of connectivity_pvalue (through parallelization)
  • Implement gene ontologies
  • Implement relative subsampling
  • Implement histogram of edge contributions to gene connectivity
  • Improve open-source Mapper implementation (through better lens implementation)
  • Force usage of graphviz layouts
  • PEP8

pcamara avatar Jun 05 '17 01:06 pcamara

Hi there! I've been studying TDA and have been looking for an open source project to help out with that aims to apply TDA to a meaningful problem. Is there still interest in these enhancements, or has your lab moved on to other projects?

SioKCronin avatar Jun 12 '19 13:06 SioKCronin