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10x genomics FFPE chemistry

Open wangjiawen2013 opened this issue 2 years ago • 0 comments

Hi, 10x genomics has developed new technique to detect spatial gene expression of FFPE (formalin-fixed paraffin-embedded) tissue. About 20,000 probes are used to quantify the transcriptome. Cellranger now use the 20,000 probes as reference to map the reads. How to process the data using simpleaf ? image

wangjiawen2013 avatar Feb 02 '24 01:02 wangjiawen2013