RapMap icon indicating copy to clipboard operation
RapMap copied to clipboard

What is the behavior of quasimapping when reads overlap multiple transcripts?

Open nachocab opened this issue 8 years ago • 0 comments

I haven't been able to find a clear answer in the documentation: are the read counted as in all the transcripts they overlap or are they divided amongst them. If it's the second case, is it kosher to add the counts for all the transcripts of a given gene to get the "gene counts"?

nachocab avatar Jan 23 '18 02:01 nachocab