RawHash
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CMU-SAFARI
RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al...
This pull request is supposed to implement the switch from Makefile to CMakeLists.txt. Making it a pull request rather than direct commit, as the change is significant, and there might...
Hello I wanted to try out RawHash on some human genome data. I am still at the first step on generating the index. For R9.4 I could create the index...
Dear developers, This tools looks super interesting! I wonder if you have tried it coupled with Read Until functionality for cDNA or other "short" long reads (e.g. 1-2kbp). If not,...
@canfirtina, We performed an experiment where : - Target region - Chromosome 21, Non-target region - Chromosome 22 - Squiggles were sampled using the tool [Squigulator](https://github.com/hasindu2008/squigulator) - For the first...
Ordered by priority: - [x] cmake should build both targets `rawhash2`, `rawhash2_usinglib` without having to modify the option `build_cli` (i.e. remove this option and build both targets): currently not possible...
Dear developers, I'd like to check hash value of each seed in chain that maps to an error reference, how can I do that?
I tried my best to only salvage what was really necessary from tflite2 branch. I'd really appreciate some external review and verification that it works as intended after the merge.
Thank you for providing this tool! I am curious if there is an established cutoff or threshold for determining similarity during analysis. Specifically, have you tested how well the tool...
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RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al...