exdir
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CINPLA
Directory structure standard for experimental pipelines.
yaml is a great format, and human readable, but is difficult to write a parser for, it would be very useful to be able to emit the attributes and metadata...
There is quite a lot of interest in this kind of dataset-on-disk storage and I was wondering if you'd come across [N5](https://github.com/saalfeldlab/n5) and [Zarr](https://github.com/zarr-developers/zarr-python). They have very similar goals and...
Hi! I am currently developing a code that will use the Exdir format and it would be really useful to have a link in the README to download an example...
* Link classes live in links.py module * They are subclass of the abstract class Link * Functionality should match h5py Should fix https://github.com/CINPLA/exdir/issues/1 Aims for compatibility with NWB https://github.com/NeurodataWithoutBorders/pynwb/issues/629
* Docstrings for group, dataset, raw, attributes. * A getting started, file with more elaborate tutorial * Index is reduced to a bare example
To extend our support for data structures and variable length strings, storage with feather which support saving pandas DataFrames has been implemented. * Storing with feather is invoked when a...
https://github.com/CINPLA/exdir/blob/5a9a41f6b28580124931ade4594ddbe5ac00bcc3/exdir/plugins/git_lfs.py#L26 workaround ```python exdir.File(pathlib.Path('relative/path.exdir').absolute(), plugins=[git_lfs]) ```
Properties in h5py that we could support: - [x] atters - [ ] clear - [x] close - [ ] copy - [ ] driver - [ ] fid -...
The Git LFS plugin doesn't handle cases where Git prompts the user to enter her credentials. We need to detect this case and issue a useful error telling the user...
