Shiny app template errors

[erikwolfsohn]

Loving the new Shiny app for configuration! I caught a couple of issues while I was playing around with it - I'll update this if I find more:

config.yaml

• excludes Submission_Position: if GenBank isn't selected, causing the workflow to fail
• invalid values for Submission_Position: - uses None, First, Second, workflow expects 1, 2 or empty
• (sometimes?) doesn't enable Link_Sample_Between_NCBI_Databases: even though True is selected - might be worth switching this on by default when SRA and BioSample are selected together - SRA submission will fail otherwise unless the user registered BioSamples previously and manually assigns them in the metadata

SARS-CoV-2.cl.1.0,COV metadata.csv

• bs-description is not included - this isn't required for submission, but the workflow fails without it