AMBER icon indicating copy to clipboard operation
AMBER copied to clipboard
verified publisher icon CAMI-challenge

anonymous_reads.fq.gz can not be downloaded by camiClient.jar?

Open JiaLonghao1997 opened this issue 1 year ago • 0 comments

We used the following code to download anonymous_reads.fq.gz:

/home1/jialh/tools/anaconda3/envs/mamba/bin/java -jar \
/public/home/jialh/metaHiC/workdir/CAMI2/camiClient.jar \
-d https://openstack.cebitec.uni-bielefeld.de:8080/swift/v1/CAMI_Gastrointestinal_tract  CAMI_Gastrointestinal_tract -p fq.gz

Then we got the following error:

(base) [jialh@head03 CAMI2]$ sh 01download.sh
Downloading CAMI_Gastrointestinal_tract/short_read/2017.12.04_18.45.54_sample_10/reads/anonymous_reads.fq.gz
Downloading CAMI_Gastrointestinal_tract/short_read/2017.12.04_18.45.54_sample_2/reads/anonymous_reads.fq.gz
Downloading CAMI_Gastrointestinal_tract/short_read/2017.12.04_18.45.54_sample_0/reads/anonymous_reads.fq.gz
Downloading CAMI_Gastrointestinal_tract/pacbio/2018.01.23_11.53.11_sample_2/reads/anonymous_reads.fq.gz
Downloading CAMI_Gastrointestinal_tract/pacbio/2018.01.23_11.53.11_sample_10/reads/anonymous_reads.fq.gz
Downloading CAMI_Gastrointestinal_tract/short_read/2017.12.04_18.45.54_sample_1/reads/anonymous_reads.fq.gz
Downloading CAMI_Gastrointestinal_tract/short_read/2017.12.04_18.45.54_sample_9/reads/anonymous_reads.fq.gz
Downloading CAMI_Gastrointestinal_tract/pacbio/2018.01.23_11.53.11_sample_9/reads/anonymous_reads.fq.gz
Downloading CAMI_Gastrointestinal_tract/short_read/2017.12.04_18.45.54_sample_5/reads/anonymous_reads.fq.gz
Downloading CAMI_Gastrointestinal_tract/short_read/2017.12.04_18.45.54_sample_4/reads/anonymous_reads.fq.gz
java.io.IOException: Server returned HTTP response code: 401 for URL: https://openstack.cebitec.uni-bielefeld.de:8080/swift/v1/CAMI_Gastrointestinal_tract/short_read/2017.12.04_18.45.54_sample_10/reads/anonymous_reads.fq.gz
        at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1913)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1509)
        at java.base/sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:245)
        at java.base/java.net.URL.openStream(URL.java:1117)
        at cami.download.SwiftDownload.urlDownload(SwiftDownload.java:122)
        at cami.download.SwiftDownload.lambda$null$2(SwiftDownload.java:38)
        at java.base/java.util.stream.ForEachOps$ForEachOp$OfRef.accept(ForEachOps.java:183)
        at java.base/java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:177)
        at java.base/java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:177)
        at java.base/java.util.ArrayList$ArrayListSpliterator.forEachRemaining(ArrayList.java:1654)
        at java.base/java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:484)
        at java.base/java.util.stream.ForEachOps$ForEachTask.compute(ForEachOps.java:290)
        at java.base/java.util.concurrent.CountedCompleter.exec(CountedCompleter.java:746)
        at java.base/java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290)
        at java.base/java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020)
        at java.base/java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656)
        at java.base/java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594)
        at java.base/java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:177)
Downloading CAMI_Gastrointestinal_tract/short_read/2017.12.04_18.45.54_sample_12/reads/anonymous_reads.fq.gz
javax.net.ssl.SSLException: No PSK available. Unable to resume.
        at java.base/sun.security.ssl.Alert.createSSLException(Alert.java:129)
        at java.base/sun.security.ssl.Alert.createSSLException(Alert.java:117)
        at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:308)
        at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:264)
        at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:255)
        at java.base/sun.security.ssl.ServerHello$T13ServerHelloConsumer.consume(ServerHello.java:1224)
        at java.base/sun.security.ssl.ServerHello$ServerHelloConsumer.onServerHello(ServerHello.java:984)
        at java.base/sun.security.ssl.ServerHello$ServerHelloConsumer.consume(ServerHello.java:872)
        at java.base/sun.security.ssl.SSLHandshake.consume(SSLHandshake.java:392)
        at java.base/sun.security.ssl.HandshakeContext.dispatch(HandshakeContext.java:444)
        at java.base/sun.security.ssl.HandshakeContext.dispatch(HandshakeContext.java:421)
        at java.base/sun.security.ssl.TransportContext.dispatch(TransportContext.java:178)
        at java.base/sun.security.ssl.SSLTransport.decode(SSLTransport.java:164)
        at java.base/sun.security.ssl.SSLSocketImpl.decode(SSLSocketImpl.java:1152)
        at java.base/sun.security.ssl.SSLSocketImpl.readHandshakeRecord(SSLSocketImpl.java:1063)
        at java.base/sun.security.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:402)
        at java.base/sun.net.www.protocol.https.HttpsClient.afterConnect(HttpsClient.java:567)
        at java.base/sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:185)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1581)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1509)
        at java.base/sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:245)
        at java.base/java.net.URL.openStream(URL.java:1117)
        at cami.download.SwiftDownload.urlDownload(SwiftDownload.java:122)
        at cami.download.SwiftDownload.lambda$null$2(SwiftDownload.java:38)
        at java.base/java.util.stream.ForEachOps$ForEachOp$OfRef.accept(ForEachOps.java:183)
        at java.base/java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:177)
        at java.base/java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:177)
        at java.base/java.util.ArrayList$ArrayListSpliterator.forEachRemaining(ArrayList.java:1654)
        at java.base/java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:484)
        at java.base/java.util.stream.ForEachOps$ForEachTask.compute(ForEachOps.java:290)
        at java.base/java.util.concurrent.CountedCompleter.exec(CountedCompleter.java:746)
        at java.base/java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290)
        at java.base/java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020)
        at java.base/java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656)
        at java.base/java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594)
        at java.base/java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:177)
javax.net.ssl.SSLException: No PSK available. Unable to resume.

JiaLonghao1997 avatar Feb 06 '25 03:02 JiaLonghao1997