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BlueBrain
Blue Brain text mining toolbox for semantic search and structured information extraction
Bumps [flask](https://github.com/pallets/flask) from 2.0.1 to 2.3.2. Release notes Sourced from flask's releases. 2.3.2 This is a security fix release for the 2.3.x release branch. Security advisory: https://github.com/pallets/flask/security/advisories/GHSA-m2qf-hxjv-5gpq, CVE-2023-30861 Changes: https://flask.palletsprojects.com/en/2.3.x/changes/#version-2-3-2...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
Bumps [ipython](https://github.com/ipython/ipython) from 7.31.1 to 8.10.0. Commits 15ea1ed release 8.10.0 560ad10 DOC: Update what's new for 8.10 (#13939) 7557ade DOC: Update what's new for 8.10 385d693 Merge pull request from...
Bumps [cryptography](https://github.com/pyca/cryptography) from 3.4.7 to 39.0.1. Changelog Sourced from cryptography's changelog. 39.0.1 - 2023-02-07 * **SECURITY ISSUE** - Fixed a bug where ``Cipher.update_into`` accepted Python buffer protocol objects, but allowed...
Fixes #{issue-id-number}. ## Description Please provide here a summary of the changes introduced by this PR. ## How to test? Please provide here instructions on how to test the changes...
## Description Adds a function to perform and store the output of NER. NER is run remotely using the deployment on Kubernetes. It supports both ML and RULE-based approaches. The...
Fixes #637. ## Description Adds the abstract to the paragraphs table so it can be searchable using semantic search. ## How to test? Abstract field added to the tests/unit/entrypoint/database/test_add_es.py ##...
Fixes #623 ## Description Add function to update embedding on paragraphs without embeddings using a local model ## How to test? Embeddings are present in the database. test/unit/k8s/test_add_embeddings.py ## Checklist...
## Context - In #621 we ingested into our database the literature until 2022-08-31. - We now need to run our Text Mining tools on it in order to provide...
## Context - We want to have a first version of the Elasticsearch literature database. - It's OK even if we don't handle all sources yet (e.g. arXiv takes huge...
## Context - We have set up a pipeline stage that is able to determine the relevance of an article w.r.t. some user-given topics configuration. - Currently, the only config...