queryHits()/subjectHits() for HitsList throw error

[FelixErnst]

Hi,

the following example reports an error

library(S4Vectors)
library(IRanges)
hits <- findMatches(c("1","2","3","4"),c("1","1","2","4"))
hits <- relist(hits,PartitioningByEnd(c(2,3,4)))
queryHits(hits)
#> Error in rep.int(x@subjectOffsets, nr): invalid 'times' value

This seems to originate in the as.matrix function.

SessioInfo

sessionInfo()
#> R version 3.6.2 (2019-12-12)
#> Platform: x86_64-w64-mingw32/x64 (64-bit)
#> Running under: Windows 10 x64 (build 18363)
#> 
#> Matrix products: default
#> 
#> locale:
#> [1] LC_COLLATE=German_Germany.1252  LC_CTYPE=German_Germany.1252   
#> [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C                   
#> [5] LC_TIME=German_Germany.1252    
#> 
#> attached base packages:
#> [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
#> [8] methods   base     
#> 
#> other attached packages:
#> [1] IRanges_2.20.2      S4Vectors_0.24.3    BiocGenerics_0.32.0
#> 
#> loaded via a namespace (and not attached):
#>  [1] Rcpp_1.0.3      digest_0.6.24   magrittr_1.5    evaluate_0.14  
#>  [5] highr_0.8       rlang_0.4.4     stringi_1.4.6   rmarkdown_2.1  
#>  [9] tools_3.6.2     stringr_1.4.0   xfun_0.12       yaml_2.2.1     
#> [13] compiler_3.6.2  htmltools_0.4.0 knitr_1.28