DelayedArray
DelayedArray copied to clipboard
Bioconductor
A unified framework for working transparently with on-disk and in-memory array-like datasets
Wanted to flag this issue here bc I realize there's quite a bit of overlap in many of the these functions between packages. https://github.com/PeteHaitch/DelayedMatrixStats/issues/82 **Update**: I've been noticing a higher...
The recent conversation in theislab/zellkonverter#34 reminded me of some work I did in LTLA/beachmat#20. Briefly, the idea was to speed up row-based block processing of `dgCMatrix` by performing a single...
For example: ```r library(DelayedArray) x
```r library(DelayedArray) x
Here I'm talking about `setHDF5DumpChunkLength`, `setHDF5DumpChunkShape`, and whatever extra functions are used to auto-choose "sensible" chunk dimensions for the HDF5 arrays. Can these be moved to **DelayedArray** for re-use by...
When I try `cor`, I get errors like `Error in cor(DelayedArray(x), DelayedArray(y)) : 'x' must be numeric`. Am I missing something simple? If it's not implemented, I have a little...
Using an example in `?SparseArraySeed` to illustrate: ```r library(DelayedArray) set.seed(10) ## A big very sparse DelayedMatrix object: nzindex4
Related to #27, though I note that the following now works ``` r library(DelayedArray) DelayedArray( matrix( IntegerList( c(list(c(1L, 1L)), list(c(1L,1L)), list(c(1L,1L)), list(c(2L,2L))) ), nrow = 2, ncol = 2) )...
I'm trying to implement writing to an **arbitrary** _RealizationSink_ backend via `BiocParallel::bplapply()` with an **arbitrary** _BiocParallelParam_ backend. That is, I want to be able to construct blocks of output, possibly...
@LTLA Do you think you can look into this? ``` library(DelayedArray) m
Metadata
Owner
Metadata
A unified framework for working transparently with on-disk and in-memory array-like datasets